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Logical rules from data
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More links on:
AI and Machine Learning

AI in Information Retrieval

Cognitive science

Computational Intelligence

Neuroscience

Software & Databases

Science & Fringes

Comparison of classfication results

Logical rules extracted from data

Maintained by
Wlodzislaw Duch
Red color
= superpages.
Older version of this page
in Polish.
Neural Networks

Neuroscience

Machine Learning + AI

Data Mining

Math & Statistics

Visualization of multidimensional data

Other software

Databases

Neural Networks
Lists of links
:
Gepetto
list, from Amsterdam
Internet Analysis Tools Registry
, supported by The Human Brain Project
Neural/AI Software
 great list from Aston University
Neuroinformatics software tools
NN simulation tools
 Franz Kurfess, Uni. Ulm, over 50 programs
Free & Shareware Simulators
 about 100 programs, PNL Computational Intelligence list
Free & Shareware Simulators
 over 40 programs, PNL Neural Networks list
Mathtools
, many programs.
Neural Software
 from Bristol, over 20 programs
Neural Networks and Fuzzy Systems
, including Association Rule Induction, Regression, Trees, Bayes Classifier, Graphical Models, Network Training, Probabilistic and Fuzzy Clustering, Convex Hull Construction
Online neural demos
:
Artificial Neural Networks Lab: Java applets and GIFanimation
Many nice demonstrations: SVM, boosting, trees
DemoGNG
, competitive learning (Loos, Fritzke)
Java demos of genetic and NN programs
Neural tutorial with Java applets
Java Applets for Neural Network and Artificial Life
RBF demo
(Hong, MIT)
Virtual Minds
Java demo
WebSim Java demo
: neural, optimization, plots (Boston U.)
Sharky NN
, nice 2D visualizations.
Large software packages
Deep Learning
Software and info
Comparison of deep learning software
 Wiki
KD nuggets, long list of software
for data mining.
GASP, Globally Accessible Statistical Procedures
, mostly applets.
Java Neural Network Simulator
, JNNS (new version of SNNS)
KEEL
 Knowledge Extraction Evolutionary Learning, 450 modułów!
KNIME
, includes Weka and Rscripts.
LNKnet, MIT
, neural, statistical, machine learning, dead project.
LENS, light, efficient network simulator
Orange, from Slovenia
, componentbased data mining software, includes SOM, MDS and other visualizations, 2006; some
additional modules
.
Pentaho data mining
(based on Weka)
Rproject, statistical computing

R Rattle
, R for data mining 
SciViews open source
, data acquisition, spacetime series, image analysis etc.
Stuttgart Neural Network Simulator
(SNNS),
copy in Poland
WEKA, Machine Learning Project
, many models 
WEKA Metalearning
YALE
, Yet Another Learning Environment, in Java, includes Weka models  now
Rapid Miner
Efficient Learning, Largescale Inference, and Optimization Toolkit
General software packages
:
Matlab clones
page:
Scilab

Rlab

Octave

SOM software
:
EUDAPTICS  SOMine
(demo)
ESO, Emergent SOM
, Databionic tool.
WEBSOM for freetext browsing
JavaSOM
LVQ and SOMPACK
, HUT 
SOM Toolbox in Matlab
, Helsinki
SOM and LISSOM
, with some programs for NLP, from UTCS Tx 
Other software packages with neural models
:
DDlab, discrete dynamics networks
DDtools, data description toolbox
, oneclass problems.
Dynamics  program i tutorial

DIBA
, with interesting visualization.
ffnet
, regularization, SA and other interesting things.
Joone, Java free NN engine
LENS
, with good visualization.
LVQ visualization
, Magdeburg 
Pajek, from Slovenia
, social networks analysis 
an introduction to Pajek

Quantum clustering
, D. Horn 
SimBrain
, NN+MDS.
Another SimBrain
, with integrate/fire neurons.
Spider
, Matlab objectoriented machine learning, SVMoriented.
Shogun
, A Large Scale Machine Learning Toolbox
Netlab
(Bishop, Nabney)  programs in Matlab for NN and Bayes nets,
copy in Torun
Neural Networks at your Fingertips
, program sources, K. Kutza.
Neuralogic Windows: Ultra High Performance NN
(PC, Cray)
NODELIB, Neural Optimization Development Engine library
(PC, Cray)
Oxlearn
, Matlabbased Neural Network Simulator for Education.
PDP ++ 2003
, new version from the PDP book of Rumelhart and McClelland 
RNS++ 2005
, even newer version based on PDP++
Semeion software
, many types of networks from Italy
SNARLI
, Java, by Simon D. Levy.
Sieci Neuronowe dla każdego!
Z programami w C# (2007)
Neuroscience
List:
Neuroscience simulation software
List of
computational neuroscience software
Brian spiking network
simulator.
Emergent
 extension of PDP++,
Randall C. O'Reilly
GENESIS Simulator
, biological neurons
EEGLAB, signal processing in Matlab
, EEG, MEG and other electrophysiological signals.
ICAlab
and
NMFlab
and
ButIf bump analysis
from Cichocki group, RIKEN BSI
Keenan's Software for Memory and Cognition
, psychological experiments
LORETA software and papers
, low resolution brain electromagnetic tomography.
Mantra  Neural Java
, spiking neuron and other models (Gerstner)
NeuroGuide dynamic EEG
Nengo
rapid spiking network simulator
NEST initiative
Delay Vector Variance
(DVV) toolbox for time series (Mandic).
econnectome
, (Electrophysiological Connectome) is an opensource MATLAB software package for imaging brain functional connectivity from electrophysiological signals.
Commercial and demos
GhostMiner Software
GTech
, brain signals in Matlab
Gensym Corporation
, intelligent operations management, neural & AI software
LocBoost
and other goodies, Java demo
FuzzyTech
, fuzzy and neurofuzzy
IFS Limited
, Amber i Onyx neuroforcasting
Orka, NN/GA software
Arkus (Wroclaw), demo
NeuroSolutions
Evaluation Edition
NeuroShell Easy and Gene Hunter
demos, Ward Systems Group
Saxon
, NN+MDS.
Synapse by Peltarion
, nice interface and many functions, 30 days demo
Universal Problem Solvers, Inc.
(Transdimensional Learning, MPIL)
Neural Connection  SPSS
Vitalnet System for Analyzing Health Data
Zsolutions
Artificial Intelligence (symbolic)
GNU/Linux AI & Alife
HOWTO list of software packages
AI Planning Systems
(Maryland)
AI Medical Systems in Routine Use
Soar
(Newell, Simon, Laird, others)  expert system with some learning capabilities
See also
Cognitive Architectures
page
Machine Learning & Data Mining
Lists of packages
CMU Software in ML
list
Cagliari University list
Gaussian Processes
, list of packages
T++, a C++ library
of mathematical, signal processing, speech processing, and communications classes and functions.
KDnets Software
 long list
KDnuggets Siftware
 long list
Matlab CI software
, Kevin Murphy.
Model and Mine
, list of DM packages
MLNet Software links
Machine Learning Library
in C++, a bit hard to use (Silicon Graphics)
Machine Learning Open Source Software
, long list
Neural/AI Software
(from Aston)
Sciview list
of software packages
Torch ML Library
in C++, free
Tom Mitchell
, NN + Bayes + Decision Tree software
CBA, Classification and Association Rules
, NUS Singapore
Domrule, logical rules
, Lin Min Fu
Emerald
, AG and other ML software, Michalski's GMU lab
MLC++, Color GLDs
ML archive
 University of Portsmouth AI Group
Tools for learning CI
, for AI course;
ID3 Code
with examples, decsion tree
NETLAB
Bayesian Neural Networks (Bishop, Nabney),
copy in Torun
Nbody methods
, fast O(N) learning;
RIPPER
rule induction
Statistical Pattern Recognition Lib
(from TU Delft)
TANAGRA
, includes visualization, clustering, association, supervised learning.
TiMBL, MemoryBased Learning techniques
Forte (First Order Revision of Theories from Examples)
machine learning system
Rough sets
:
GROBIAN project
 userfriendly rough set software
Reduct & Lobbe Technologies
(rough sets, Canada)
Rosetta
(rough sets)
Rough Enough
(Torvill Bjorvand)
ROSE
Rough Set Software, IIPP
Rough Set software
(Uni. Regina)
Rough Set systems, Inc.
Rough Set Exploration System (RSES)
Rseslib
, library of machine learning data structures and algorithms implemented in Java.
CBR, CaseBased
:
CBR Software List
CBR Software
, Haley Enterprise
Varia
:
Algorithm visualizations
Walrus  hyperbolic 3D
vis.
C5.0, See5 & Cubist
(Ross Quinlan,
Rulequest Research
) 
C4.5 software and tutorial

YaDT, fast tree
and C4.5 improvements EC4.5 
Occam tree
from Visionary Tools 
Automated Reasoning
, troubleshooting support
dmt  automatic identification
Free Statistical Software
Genetic Algorithms Digest
Generate new ideas
creativity support software !
Partek Data Analysis & Modeling Software
: PR, NN, Data Mining,
demo
Machine Learning for Cancer Diagnosis and Prognosis
NeuroSoft
SynthTalk, Gam, Regulus
Pattern recognition
Ahlea Systems Corp: Pattern Recognition in Matlab
, Software Patches, commercial
caret: Classification and Regression Training
, in R
SprLib and ANNLib
, from Delft Technical University Pattern Recognition Group
PRTools  Pattern Recognition Tools
(Heijden, Duin, de Ridder, Tax)
Statistical Pattern Recognition Toolbox
TOOLDIAG pattern recognition toolbox
FLANN
, Fast Library for Approximate Nearest Neighbors
Data mining
Data Mining Software List
Data Mining Software Vendors
Cognitive Processor
 Molly Group support management software, data mining
Free and Commercial Data Mining Software
GMDH Shell: Data Mining & Forecasting Software
(available for free download)
DM Review list
(see Software Demos)
DM Maximizer
, DMM demo 
DMS online serwer
, Inductive Learning by Logic Minimization (ILLM) 
Galvano software
, French group, many programs, with DM tutorial 
GhostMiner Software

Statconsulting PL

IBM Quest
(free) 
InfoFuzzy Network (IFN)
(free) 
Mine It
Easyminer 
SAS Enterprise Miner

SGI MineSet

Xpert Rule Miner
(Attar Software) 
XELOPES library
, embedded DM 
Business Miner
(BusinessObjects) 
Molecular Mining
(bioinformatics software GeneLinker)
Dragon Genome Explorer
Psychometric test

Math & Statistics  lists
Netlib
 numerical software
Statlib
 statistical software
Boost graphics library
JBoost for boosting clasification
, with ADTrees.
Darren guide
to statistical resources, software
Exact randomisation statistics
software list
Free statistical software packages
Guide to mathematical software
(NIST, excellent)
Sources of Math Software
(NIST)
Statistical and Computational Software
(RFE list)
Statistics.com
tools, software, data
Anderson Hospital, biostatistics programs
Demo of genetic and NN algorithms in Java
GMM and MINZ packages in Matlab
, spectral density, probit, logit (Mike Cliff)
Mathematical Programming in Machine Learning
(Wisconsin)
Ordination software
(for ecologist)
Provalis Research
: MultiVariate Statistical + inne programy statystyczne.
Statistical Analysis and Graphics
, Java Applets
Statistical Software Components
from Boston College Department of Economics
Web Pages that Perform Statistical Calculations!
also many free statistical packages.
Scientific software
, Word2Tex etc (useful)
Free software
:
List from Statistics.com
tools, software, data 
list from recursive partitioning
AMELIA: A Program for Missing Data
, statistical software, Gary King
AutoClass  Bayesian classification and clustering
CN2 decision tree
EMMIX
, EM mixture model
Medcalc, statistics for biomedical research
Multiple imputation software
NEFCLASS< NEFCON< NEFPROX
neurofuzzy software (Nauck)
SISA, Simple Interactive Statistical Analysis
SNOB MML unsupervised classification
TimeStat:
freeware PCA, ARMA, FTT, spreadsheet style
ttests and other statitical tests
from Paul Barrett
Trevor Hasti: SVMs, discriminant and prinicipal curves
Vista  visual statistics
SVM and kernel methods
Software list from Kernelmachines.org
Comparison of SVM software
(getting old, 2005)
Kernel methods in Pattern Analysis
list, John ShaweTaylor & Nello Cristianini, 2004
Wikipedia SVM list
SVM Online demonstration
BSVM
, SVM solved by another method
Core Vector Machine
, fastest SVM around?
GiniSVM
, SVM for regression
GIST
, SVM and kernel PCA (Unix only)
HeroSVM
LIBSVM
, SVM for large classification and regression
LIBLINEAR
: A Library for Large Linear Classification.
LSSVMlab
, least squares SVM, Matlab toolbox + tutorials
PSVM software
Multivariate Relevance Vector Machine
(MVRVM)
Shogun  A Large Scale Machine Learning Toolbox
SVMLight
, SVM software for regresion and classification
SVM in the primal
, Matlab code
BMR: Bayesian Multinomial Regression Software
DTREG: SVM, decision tree + logistic regression
(commercial, demo available)
Clustering
Affinity propagation
COMPACT  Comparative Package for Clustering Assessment
, D. Horn
CLUSION
, Cluster Analysis and Cluster Ensemble Software
CLUTO
, Clustering HighDim data, texts
Dendrograms data clustering
Fuzzy Clustering
Gmeans, C++ program
Joining clustering algorithms
, dendrograms and other
KlustaKwik, Automatic Clustering
MCL  a cluster algorithm for graphs
MIXMOD (MIXture MODelling)
, fits mixture models
Multidimensional Clustering and Outlier Detection
PermutMatrix
, seriation analysis.
Quantum clustering
, D. Horn 
SPmeans, C++ program
Commercial Statistical Software
:
Parallel Performance Group, Inc.
, HighTechnology Commercial Software
CART

MARS

GMAXDM
, genetic system (Salford Systems)
Data Desk (Majih)
AccuROC for Windows

GraphROC for Windows
Minitab (Minitab Inc)
Predictive Data Mining
, Weiss S, Indurkhya, book and software
Simstat for Windows
StatSoft Polska
Sp. z o.o.  STATISTICA
StatSol
, missing data, statistical software
Stata
statistical software
Statgraphics (Manugistics Inc)
, STATGPL
CSS STATISTICA (StatSoft Inc.)
SPSS
(SPSS Inc.), pakiet
Systat
SAS Institute
 DSS, data mining
SPlus (Mathsoft)
StatXact, LogXact (Cytel)
Visualization of multidimensional data
Larger lists of software pacakges:
IVS  Information Visualization Software Repository
, many interesting algorithms
Info Visualizations at InfovisWiki
Graphics and data analysis software
Information Visualization
, T. Cribbin.
Long list of packages from UBC
Online Library of Information Visualization Environments
.
MDS software
:
Collection of MDSlike programs

Taguchi MDS programs collection

HiTMDS
, fast MDS 
MDS
, multidimensional scaling 
MDS Alscal

HiTMDS
, using correlation coefficient 
New MDSX
, multidimensional scaling 
Permap MDS

ALSCAL
 old MDS Program
several MDS packages
, from Granular.com 
HMDS: Hyperbolic Multidimensional Scaling

HMDS project

HMDS paper (2004)

Proximity visualization
, W. Basalaj, interesting thesis
CAIDA Visualization Tools
, Internet data visualization.
COVIAGRA, Learning Coordinate Covariances via Gradients
, Matlab code.
Davis  PCA, parallel, dendrograms, touring
...
Facet Analysis
, Smallest Space Analysis, Multidimensional Scalogram Analysis, Partial Order Scalogram Analysis
GCSVIS
 Growing Cell Structures.
Ggobi for Windows
 many visualizations 
GE Data visualization
collection
GTM
 Bishop and Svensen.
Hierarchical Clustering Explorer
for Interactive Exploration of Multidimensional Data.
HiSee project
, Scott Hotton and Jeff Yoshimi.
Hyperplane animator
KNOT Tools for Pathfinder Network Analysis

Levenstein Software
Locally Linear Embedding
MaxdView
, bioinfo data
MANIfold learning
, Matlab for ISOMAP, LLE, Hessian LLE, Laplacian, and LTSA.
Orange, from Slovenia
, includes parallel coordinates, multigrams, SOM, MDS ...
Pathfinder Networks Wiki
PhiVis
, hierarchical visualization  Bishop and Tipping
Parvis
, a tool for parallel coordinates
Radviz visualization
Spotfire
 clustering, visualization
SigViewer
, visualization of biosignals
Visalix
, Visual Interactive System for Annotation and LearnIng at Xerox.
Visual insights
, methods and software for eBusiness.
WheelVue visualization
 Excel, treelike diagrams
XDAT  A free software for multidimensional data analysis and visualization
Xgobi, XGvis
 many visualizations 
tutorial, gene expression data

Principal curves
page 
Local principal curves
in R
Reccurrence plots
(N. Marwan and others)
PyCogent
 a software library for genomic biology, good FastMDS program
More visualization algorithms
Other software
LEDA, Library of Efficient Data types and Algorithms
Benchin Software Reviews
 also for statistical/ AI/ neural software
Jadex BDI Agents
Java software
Software in Mental Health
Intel probabilistic network library

AudioVisual Speech Recognition

Intel Open Source Computer Vision
Visumap  Relational Perspective Maps
(free trial)
Dimensionality reduction
, many embedding methods, Matlab package.
Psychometric programs
:
MMPI/MMPI2 Adult Interpretive Report

Psychological Assessment Resources

Psychological Science net

Optimization
:
INFORMS OR/MS Resource Collection
.
ASA, Ingber Lester
 Adaptive Simmulated Annealing code
Global Optimization: Software, Events, Publications, Home Pages
Merlin  multidimensional optimization
NEOS Guide: Optimization Software
Multisimplex methods
, demo.
Simulated Annealing
info i software.
Belief (Bayesian) networks
:
Bayes Belief Networks
+ HMM + MDP + Kalman filter, Kevin Murphy.
Bayesian Knowledge Discovery
Bayesia Lab
, Bayesia.
Bayesware Discoverer
(commercial)
Bayesian Network Repository
Bayesian Net Library
(Norsys)
Bayes net Matlab toolbox
(K. Murphy)
Bayesware Ltd Discoverer
Belief Network (BN) PowerConstructor
Elvira project
 and
more on the Elvira project
.
GeNIe and SMILE
 building graphical decisiontheoretic models, Bayesian networks, influence diagrams, and structural equation models.
Netica
, "the world's most widely used Bayesian network development software".
Rectified Gaussian Belief Networks
(MIT), Matlab Program
Software for Manipulating Belief Networks
(> 10 packages) and for
Learning Belief Networks
from Data
Genetic/evolutionary optimization software
:
GA Archive
NeuCom  A Neurocomputing Decision Support Enviroment
(KEDRI)
Jerzy Korczak, Strassbourg group
, several packages.
HMM
:
HMMER  hidden Markov models of DNA and protein consensus
HMM + MDP
, Kevin Murphy.
ICA
, Independent Component Analysis + variants
Blind Source Separation Using Temporal Predictability
, Matlab code
Several ICA algorithms
, Matlab code (DK)
ICA Lab
, Matlab code, RIKEN
TreeDependent CA
, Matlab code
MISEP Linear and Nonlinear ICA Toolbox
Empirical Mode Decomposition
.
Text Processing, retrieval, clusterization, classification
:
See also
NLP tools
on the AI in IR list.
NLP Tools list
list of NLP software from Uni. Mass.
.
Proxem NLP Resources
Bow and Rainbow Toolkit
, with C source code.
CLUTO
, Clustering HighDim data, texts.
Ellogon
, a multilingual, crossplatform, generalpurpose language engineering environment.
LingPipe, Java NLP tools
, with MedLine support.
Mallet project, in Java
Megaputer
PolyAnalyst, TextAnalyst, WebAnalyst
Natural Language Toolkit
, Python libraries
OpenNLP, center for NLP open source projects
, including MaxEnt.
Stanford Java NLP
VisualText Pro
, free!
WEBSOM for freetext browsing
WordStat text mining
, works with QDA Miner
Bixo open source web mining
toolkit.
Visual Text 2 Pro
TextGarden
 TextMining Software Tools
Psychology and cognitive science software
:
Cognitive & Psychology Software
CTI Psychology: Software
Computers in Mental Health
Repertory Grids
 Techwiki with many links to software
Software Archives in Psychology
Software for visual psychophysics
Tlearn
 Kim Plunkett and Jeff Elman 
Walnut
 CALM, Hopfield, other 
Rethinking Innateness
: A Connectionist Perspective on Development
Linguistics
:
Natural Language Software Registry
Neural Translator (ENPL)
Some NLP tools
Speechrelated tools
:
CSLU Speech Tools
, Spectrogram
Speech Toys
Speech corpora:
CSLU Corpora

Linguistic Data Consortium
 Machine
Readable Spoken English
Corpus
Financial and econometric software
:
Attrasoft Neural Network Applications
 stock predictions, image classfication etc
CodEc  Programs for Economics and Econometrics
ELSA, Econometrics Laboratory Software Archive (Berkeley)
LBS Model Building Software
Lista z NUMA
RegX, freeware
(Stephen Hall, LBS)
Software from CTI Centre Economics
SORITEC
, power tools for econometric and statistical analysis
Winsolve
 package for solving nonlinear macroeconomic models
Expert Systems and AI Software
:
free POPLOG
, POP11, LISP, Prolog and ML.
AITECH
(Katowice)
RLGlue, interconnecting reinforcement learning agents
and environments.
Datasets
Comparison of classfication results

Comparison of logical rules extracted from data

Lists of data sources
:
CBMR list
of data sources  great list from WWW Virtual Library
GMD Repository
and their
MLNet Data links
RISE  Repository of online Information Sources
used in information Extraction tasks
BrainComputer Interface
(BCI) competitions
Data
:
New UCI Machine Learning Repository

old UCI

unofficial copy in Torun

UCI KDD Archive
 use
http://ftp.ics.uci.edu/pub/machinelearningdatabases/
instead of ftp!
TuneIT
, Testing Machine Learning & Data Mining Algorithms  Automated Tests, Repeatable Experiments, Meaningful Results.
ExpDB
, experiment database, automatic comparison of results on various datasesets and algorithms.
CMU Artificial Intelligence Repository
CMU Machine Learning Repository
DASL. The Data and (Statistical) Story Library
Bob Duin links to data
Data hub
(links to many data types)
UCLA data
and their
cases studies
List of benchmark data from Czestochowa
Data Mining Institute, Wisconsin
, software and data
KONECT, the Koblenz Network Collection
of large network datasets
Neuroscience data
1000 connectom project
Autism Brain Imaging Data Exchange
Bioinformatics data
Bacterial Genomes Functional Annotation Benchmark Dataset
Biologia molekularna (molecular biology)
Kent Ridge bioinformatics

Expected FoldProtein classes (DEF)
UPITT Cancer Gene Expression Data
(Pittsburg)
Data and systematic comparison of results
(Leuven)
Protein Folding prediction
, 27 classes, multiple kernels.
Stanford Microarray Database
KEDRI, gene expressions (large zip file!)
Bladder Cancer Microarray data
(Leuven)
Time series
:
Econometric data
(ELSA, Berkeley) 
FinWeb Databases

Financial Data Finder

Global Financial Data

Investment data collection
(FTP) 
Time Series Data Library

Simple Time Series data

Climate Modeling
data
Census database, USA
DASL
, The Data and Story Library (StatLib)
DELVE  Data for Evaluating Learning in Valid Experiments
Dr. B's Wide World of Web Data
International Association for Statistical Computing

datasets from IASC

few links to IASC databases
IEEE Neural Networks Council Standards Committee
, Working Group on Data Modeling Benchmarks
National Space Science Data Center
, NASA datasets)
Statistical Reference Datasets
(NIST)
StatLog datasets
(Portugal)
Statlib
, software and over 100 datasets
LLIAC datasets
(Portugal)
SCDS  create your own syntethic data
SIMBAD astronomical database
Semisupervised learning benchmarks
Images:
Curvlets

Waveatom transforms

Rice wavelet toolbox

Morphological Component Analysis

SPARCO: sparse reconstruction algorithms toolbox

Cytopathology
Texts:
The Oxford Text Archive
List of corpora
(from UC SD)
Reuters21578 Text Categorization Collection

Reuters21578 Test Collection

Tools for Reuters21578 Dataset

Ohsumed data collection
Cytopathology
NIPS 2000 competition data
Algoval
 a system for evaluating algorithms on datasets.
The Robotics Data Set Repository
SMS Spam
data
Other pages:
AI in IR

AI & ML

Computational Intelligence

Cognitive Science

Neuroscience and brains

Software and data

Science & Fringes

Comparison of classfication results

Logical rules extracted from data

Last modification 18.03.2016, by
Wlodzislaw Duch
; my
local homepage
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More links on: AI and Machine Learning  AI in Information Retrieval  Cognitive science  Computational Intelligence  Neuroscience  Software & Databases  Science & Fringes  Comparison of classfication results  Logical rules extracted from data 
Red color = superpages. Older version of this page in Polish.
Neural Networks  Neuroscience  Machine Learning + AI  Data Mining  Math & Statistics  Visualization of multidimensional data  Other software  Databases 
Neural Networks
Internet Analysis Tools Registry, supported by The Human Brain Project
Neural/AI Software  great list from Aston University
Neuroinformatics software tools
NN simulation tools  Franz Kurfess, Uni. Ulm, over 50 programs
Free & Shareware Simulators  about 100 programs, PNL Computational Intelligence list
Free & Shareware Simulators  over 40 programs, PNL Neural Networks list
Mathtools, many programs.
Neural Software  from Bristol, over 20 programs
Neural Networks and Fuzzy Systems, including Association Rule Induction, Regression, Trees, Bayes Classifier, Graphical Models, Network Training, Probabilistic and Fuzzy Clustering, Convex Hull Construction
DemoGNG, competitive learning (Loos, Fritzke)
Java demos of genetic and NN programs
Neural tutorial with Java applets
Java Applets for Neural Network and Artificial Life
RBF demo (Hong, MIT)
Virtual Minds Java demo
WebSim Java demo: neural, optimization, plots (Boston U.)
Sharky NN, nice 2D visualizations.
Comparison of deep learning software  Wiki
KD nuggets, long list of software for data mining.
GASP, Globally Accessible Statistical Procedures, mostly applets.
Java Neural Network Simulator, JNNS (new version of SNNS)
KEEL  Knowledge Extraction Evolutionary Learning, 450 modułów!
KNIME, includes Weka and Rscripts.
LNKnet, MIT, neural, statistical, machine learning, dead project.
LENS, light, efficient network simulator
Orange, from Slovenia, componentbased data mining software, includes SOM, MDS and other visualizations, 2006; some additional modules.
Pentaho data mining (based on Weka)
Rproject, statistical computing  R Rattle, R for data mining 
SciViews open source, data acquisition, spacetime series, image analysis etc.
Stuttgart Neural Network Simulator (SNNS), copy in Poland
WEKA, Machine Learning Project, many models  WEKA Metalearning
YALE, Yet Another Learning Environment, in Java, includes Weka models  now Rapid Miner
Efficient Learning, Largescale Inference, and Optimization Toolkit
General software packages:
Matlab clones page: Scilab  Rlab  Octave 
SOM software:
EUDAPTICS  SOMine (demo)
ESO, Emergent SOM, Databionic tool.
WEBSOM for freetext browsing
JavaSOM
LVQ and SOMPACK, HUT  SOM Toolbox in Matlab, Helsinki
SOM and LISSOM, with some programs for NLP, from UTCS Tx 
Other software packages with neural models:
DDlab, discrete dynamics networks
DDtools, data description toolbox, oneclass problems.
Dynamics  program i tutorial 
DIBA, with interesting visualization.
ffnet, regularization, SA and other interesting things.
Joone, Java free NN engine
LENS, with good visualization.
LVQ visualization, Magdeburg 
Pajek, from Slovenia, social networks analysis  an introduction to Pajek 
Quantum clustering, D. Horn 
SimBrain, NN+MDS.
Another SimBrain, with integrate/fire neurons.
Spider, Matlab objectoriented machine learning, SVMoriented.
Shogun, A Large Scale Machine Learning Toolbox
Netlab (Bishop, Nabney)  programs in Matlab for NN and Bayes nets, copy in Torun
Neural Networks at your Fingertips, program sources, K. Kutza.
Neuralogic Windows: Ultra High Performance NN (PC, Cray)
NODELIB, Neural Optimization Development Engine library (PC, Cray)
Oxlearn, Matlabbased Neural Network Simulator for Education.
PDP ++ 2003, new version from the PDP book of Rumelhart and McClelland  RNS++ 2005, even newer version based on PDP++
Semeion software, many types of networks from Italy
SNARLI, Java, by Simon D. Levy.
Sieci Neuronowe dla każdego! Z programami w C# (2007)
Neuroscience
List of computational neuroscience software
Brian spiking network simulator.
Emergent  extension of PDP++,Randall C. O'Reilly
GENESIS Simulator, biological neurons
EEGLAB, signal processing in Matlab , EEG, MEG and other electrophysiological signals.
ICAlab and NMFlab and ButIf bump analysis from Cichocki group, RIKEN BSI
Keenan's Software for Memory and Cognition, psychological experiments
LORETA software and papers, low resolution brain electromagnetic tomography.
Mantra  Neural Java, spiking neuron and other models (Gerstner)
NeuroGuide dynamic EEG
Nengo rapid spiking network simulator
NEST initiative
Delay Vector Variance (DVV) toolbox for time series (Mandic).
econnectome, (Electrophysiological Connectome) is an opensource MATLAB software package for imaging brain functional connectivity from electrophysiological signals.
GTech, brain signals in Matlab
Gensym Corporation, intelligent operations management, neural & AI software
LocBoost and other goodies, Java demo
FuzzyTech, fuzzy and neurofuzzy
IFS Limited, Amber i Onyx neuroforcasting
Orka, NN/GA software Arkus (Wroclaw), demo
NeuroSolutions Evaluation Edition
NeuroShell Easy and Gene Hunter demos, Ward Systems Group
Saxon, NN+MDS.
Synapse by Peltarion, nice interface and many functions, 30 days demo
Universal Problem Solvers, Inc. (Transdimensional Learning, MPIL)
Neural Connection  SPSS
Vitalnet System for Analyzing Health Data
Zsolutions
Artificial Intelligence (symbolic)
GNU/Linux AI & Alife HOWTO list of software packages
AI Planning Systems (Maryland)
AI Medical Systems in Routine Use
Soar (Newell, Simon, Laird, others)  expert system with some learning capabilities
See also Cognitive Architectures page
Machine Learning & Data Mining
CMU Software in ML list
Cagliari University list
Gaussian Processes, list of packages
T++, a C++ library of mathematical, signal processing, speech processing, and communications classes and functions.
KDnets Software  long list
KDnuggets Siftware  long list
Matlab CI software, Kevin Murphy.
Model and Mine, list of DM packages
MLNet Software links
Machine Learning Library in C++, a bit hard to use (Silicon Graphics)
Machine Learning Open Source Software, long list
Neural/AI Software (from Aston)
Sciview list of software packages
Torch ML Library in C++, free
Tom Mitchell, NN + Bayes + Decision Tree software
CBA, Classification and Association Rules, NUS Singapore
Domrule, logical rules, Lin Min Fu
Emerald, AG and other ML software, Michalski's GMU lab
MLC++, Color GLDs
ML archive  University of Portsmouth AI Group
Tools for learning CI, for AI course;
ID3 Code with examples, decsion tree
NETLAB Bayesian Neural Networks (Bishop, Nabney), copy in Torun
Nbody methods, fast O(N) learning;
RIPPER rule induction
Statistical Pattern Recognition Lib (from TU Delft)
TANAGRA, includes visualization, clustering, association, supervised learning.
TiMBL, MemoryBased Learning techniques
Forte (First Order Revision of Theories from Examples) machine learning system
Reduct & Lobbe Technologies (rough sets, Canada)
Rosetta (rough sets)
Rough Enough (Torvill Bjorvand)
ROSE Rough Set Software, IIPP
Rough Set software (Uni. Regina)
Rough Set systems, Inc.
Rough Set Exploration System (RSES)
Rseslib, library of machine learning data structures and algorithms implemented in Java.
CBR Software, Haley Enterprise
Walrus  hyperbolic 3D vis.
C5.0, See5 & Cubist (Ross Quinlan, Rulequest Research)  C4.5 software and tutorial 
YaDT, fast tree and C4.5 improvements EC4.5 
Occam tree from Visionary Tools 
Automated Reasoning, troubleshooting support
dmt  automatic identification
Free Statistical Software
Genetic Algorithms Digest
Generate new ideas creativity support software !
Partek Data Analysis & Modeling Software: PR, NN, Data Mining, demo
Machine Learning for Cancer Diagnosis and Prognosis
NeuroSoft SynthTalk, Gam, Regulus
caret: Classification and Regression Training, in R
SprLib and ANNLib, from Delft Technical University Pattern Recognition Group
PRTools  Pattern Recognition Tools (Heijden, Duin, de Ridder, Tax)
Statistical Pattern Recognition Toolbox
TOOLDIAG pattern recognition toolbox
FLANN, Fast Library for Approximate Nearest Neighbors
Data mining
Data Mining Software Vendors
Cognitive Processor  Molly Group support management software, data mining
Free and Commercial Data Mining Software
GMDH Shell: Data Mining & Forecasting Software (available for free download)
DM Review list (see Software Demos)
DM Maximizer, DMM demo  DMS online serwer, Inductive Learning by Logic Minimization (ILLM)  Galvano software, French group, many programs, with DM tutorial  GhostMiner Software  Statconsulting PL  IBM Quest (free)  InfoFuzzy Network (IFN) (free)  Mine It Easyminer 
SAS Enterprise Miner  SGI MineSet  Xpert Rule Miner (Attar Software)  XELOPES library, embedded DM 
Business Miner (BusinessObjects) 
Molecular Mining (bioinformatics software GeneLinker)
Dragon Genome Explorer
Psychometric test 
Math & Statistics  lists
Statlib  statistical software
Boost graphics library
JBoost for boosting clasification, with ADTrees.
Darren guide to statistical resources, software
Exact randomisation statistics software list
Free statistical software packages
Guide to mathematical software (NIST, excellent)
Sources of Math Software (NIST)
Statistical and Computational Software (RFE list)
Statistics.com tools, software, data
Anderson Hospital, biostatistics programs
Demo of genetic and NN algorithms in Java
GMM and MINZ packages in Matlab, spectral density, probit, logit (Mike Cliff)
Mathematical Programming in Machine Learning (Wisconsin)
Ordination software (for ecologist)
Provalis Research: MultiVariate Statistical + inne programy statystyczne.
Statistical Analysis and Graphics, Java Applets
Statistical Software Components from Boston College Department of Economics
Web Pages that Perform Statistical Calculations! also many free statistical packages.
Scientific software, Word2Tex etc (useful)
AMELIA: A Program for Missing Data, statistical software, Gary King
AutoClass  Bayesian classification and clustering
CN2 decision tree
EMMIX, EM mixture model
Medcalc, statistics for biomedical research
Multiple imputation software
NEFCLASS< NEFCON< NEFPROX neurofuzzy software (Nauck)
SISA, Simple Interactive Statistical Analysis
SNOB MML unsupervised classification
TimeStat: freeware PCA, ARMA, FTT, spreadsheet style
ttests and other statitical tests from Paul Barrett
Trevor Hasti: SVMs, discriminant and prinicipal curves
Vista  visual statistics
SVM and kernel methods
Software list from Kernelmachines.org
Comparison of SVM software (getting old, 2005)
Kernel methods in Pattern Analysis list, John ShaweTaylor & Nello Cristianini, 2004
Wikipedia SVM list
SVM Online demonstration
BSVM, SVM solved by another method
Core Vector Machine, fastest SVM around?
GiniSVM, SVM for regression
GIST, SVM and kernel PCA (Unix only)
HeroSVM
LIBSVM, SVM for large classification and regression
LIBLINEAR: A Library for Large Linear Classification.
LSSVMlab, least squares SVM, Matlab toolbox + tutorials
PSVM software
Multivariate Relevance Vector Machine (MVRVM)
Shogun  A Large Scale Machine Learning Toolbox
SVMLight, SVM software for regresion and classification
SVM in the primal, Matlab code
BMR: Bayesian Multinomial Regression Software
DTREG: SVM, decision tree + logistic regression (commercial, demo available)
Clustering
Affinity propagation
COMPACT  Comparative Package for Clustering Assessment, D. Horn
CLUSION, Cluster Analysis and Cluster Ensemble Software
CLUTO, Clustering HighDim data, texts
Dendrograms data clustering
Fuzzy Clustering
Gmeans, C++ program
Joining clustering algorithms, dendrograms and other
KlustaKwik, Automatic Clustering
MCL  a cluster algorithm for graphs
MIXMOD (MIXture MODelling), fits mixture models
Multidimensional Clustering and Outlier Detection
PermutMatrix, seriation analysis.
Quantum clustering, D. Horn 
SPmeans, C++ program
CART  MARS  GMAXDM, genetic system (Salford Systems)
Data Desk (Majih)
AccuROC for Windows  GraphROC for Windows
Minitab (Minitab Inc)
Predictive Data Mining, Weiss S, Indurkhya, book and software
Simstat for Windows StatSoft Polska Sp. z o.o.  STATISTICA
StatSol, missing data, statistical software
Stata statistical software
Statgraphics (Manugistics Inc), STATGPL
CSS STATISTICA (StatSoft Inc.)
SPSS (SPSS Inc.), pakiet Systat
SAS Institute  DSS, data mining
SPlus (Mathsoft)
StatXact, LogXact (Cytel)
Visualization of multidimensional data
MDS software: Collection of MDSlike programs  Taguchi MDS programs collection  HiTMDS, fast MDS  MDS, multidimensional scaling  MDS Alscal  HiTMDS, using correlation coefficient  New MDSX, multidimensional scaling  Permap MDS  ALSCAL  old MDS Program several MDS packages, from Granular.com  HMDS: Hyperbolic Multidimensional Scaling  HMDS project  HMDS paper (2004) 
Proximity visualization, W. Basalaj, interesting thesis
CAIDA Visualization Tools, Internet data visualization.
COVIAGRA, Learning Coordinate Covariances via Gradients, Matlab code.
Davis  PCA, parallel, dendrograms, touring ...
Facet Analysis, Smallest Space Analysis, Multidimensional Scalogram Analysis, Partial Order Scalogram Analysis
GCSVIS  Growing Cell Structures.
Ggobi for Windows many visualizations 
GE Data visualization collection
GTM  Bishop and Svensen.
Hierarchical Clustering Explorer for Interactive Exploration of Multidimensional Data.
HiSee project, Scott Hotton and Jeff Yoshimi.
Hyperplane animator
KNOT Tools for Pathfinder Network Analysis 
Levenstein Software
Locally Linear Embedding
MaxdView, bioinfo data
MANIfold learning, Matlab for ISOMAP, LLE, Hessian LLE, Laplacian, and LTSA.
Orange, from Slovenia, includes parallel coordinates, multigrams, SOM, MDS ...
Pathfinder Networks Wiki
PhiVis, hierarchical visualization  Bishop and Tipping
Parvis, a tool for parallel coordinates
Radviz visualization
Spotfire  clustering, visualization
SigViewer, visualization of biosignals
Visalix, Visual Interactive System for Annotation and LearnIng at Xerox.
Visual insights, methods and software for eBusiness.
WheelVue visualization  Excel, treelike diagrams
XDAT  A free software for multidimensional data analysis and visualization
Xgobi, XGvis  many visualizations  tutorial, gene expression data 
Principal curves page  Local principal curves in R
Reccurrence plots (N. Marwan and others)
PyCogent  a software library for genomic biology, good FastMDS program
More visualization algorithms
Other software
Benchin Software Reviews  also for statistical/ AI/ neural software
Jadex BDI Agents Java software
Software in Mental Health
Intel probabilistic network library  AudioVisual Speech Recognition  Intel Open Source Computer Vision
Visumap  Relational Perspective Maps (free trial)
Dimensionality reduction, many embedding methods, Matlab package.
ASA, Ingber Lester  Adaptive Simmulated Annealing code
Global Optimization: Software, Events, Publications, Home Pages
Merlin  multidimensional optimization
NEOS Guide: Optimization Software
Multisimplex methods, demo.
Simulated Annealing info i software.
Bayesian Knowledge Discovery
Bayesia Lab, Bayesia.
Bayesware Discoverer (commercial)
Bayesian Network Repository
Bayesian Net Library (Norsys)
Bayes net Matlab toolbox (K. Murphy)
Bayesware Ltd Discoverer
Belief Network (BN) PowerConstructor
Elvira project  and more on the Elvira project.
GeNIe and SMILE building graphical decisiontheoretic models, Bayesian networks, influence diagrams, and structural equation models.
Netica, "the world's most widely used Bayesian network development software".
Rectified Gaussian Belief Networks (MIT), Matlab Program
Software for Manipulating Belief Networks (> 10 packages) and for Learning Belief Networks from Data
NeuCom  A Neurocomputing Decision Support Enviroment (KEDRI)
Jerzy Korczak, Strassbourg group, several packages.
Several ICA algorithms, Matlab code (DK)
ICA Lab, Matlab code, RIKEN
TreeDependent CA, Matlab code
MISEP Linear and Nonlinear ICA Toolbox
Empirical Mode Decomposition.
NLP Tools list
list of NLP software from Uni. Mass..
Proxem NLP Resources
Bow and Rainbow Toolkit, with C source code.
CLUTO, Clustering HighDim data, texts.
Ellogon, a multilingual, crossplatform, generalpurpose language engineering environment.
LingPipe, Java NLP tools, with MedLine support.
Mallet project, in Java
Megaputer PolyAnalyst, TextAnalyst, WebAnalyst
Natural Language Toolkit, Python libraries
OpenNLP, center for NLP open source projects, including MaxEnt.
Stanford Java NLP
VisualText Pro, free!
WEBSOM for freetext browsing
WordStat text mining, works with QDA Miner
Bixo open source web mining toolkit.
Visual Text 2 Pro
TextGarden  TextMining Software Tools
CTI Psychology: Software
Computers in Mental Health
Repertory Grids  Techwiki with many links to software
Software Archives in Psychology
Software for visual psychophysics
Tlearn  Kim Plunkett and Jeff Elman  Walnut  CALM, Hopfield, other  Rethinking Innateness: A Connectionist Perspective on Development
Neural Translator (ENPL)
Some NLP tools
Speech Toys
Speech corpora: CSLU Corpora  Linguistic Data Consortium  Machine Readable Spoken English Corpus
CodEc  Programs for Economics and Econometrics
ELSA, Econometrics Laboratory Software Archive (Berkeley)
LBS Model Building Software
Lista z NUMA
RegX, freeware (Stephen Hall, LBS)
Software from CTI Centre Economics
SORITEC, power tools for econometric and statistical analysis
Winsolve  package for solving nonlinear macroeconomic models
AITECH (Katowice) RLGlue, interconnecting reinforcement learning agents and environments.
Datasets
GMD Repository and their
MLNet Data links
RISE  Repository of online Information Sources used in information Extraction tasks
BrainComputer Interface (BCI) competitions
TuneIT, Testing Machine Learning & Data Mining Algorithms  Automated Tests, Repeatable Experiments, Meaningful Results.
ExpDB, experiment database, automatic comparison of results on various datasesets and algorithms.
CMU Artificial Intelligence Repository
CMU Machine Learning RepositoryDASL. The Data and (Statistical) Story Library
Bob Duin links to data
Data hub (links to many data types)
UCLA data and their cases studies
List of benchmark data from Czestochowa
Data Mining Institute, Wisconsin, software and data
KONECT, the Koblenz Network Collection of large network datasets
Neuroscience data
1000 connectom project
Autism Brain Imaging Data Exchange
Bioinformatics data
Bacterial Genomes Functional Annotation Benchmark Dataset
Biologia molekularna (molecular biology)
Kent Ridge bioinformatics 
Expected FoldProtein classes (DEF)
UPITT Cancer Gene Expression Data (Pittsburg)
Data and systematic comparison of results (Leuven)
Protein Folding prediction, 27 classes, multiple kernels.
Stanford Microarray Database
KEDRI, gene expressions (large zip file!)
Bladder Cancer Microarray data (Leuven)
Time series: Econometric data (ELSA, Berkeley)  FinWeb Databases  Financial Data Finder  Global Financial Data  Investment data collection (FTP)  Time Series Data Library  Simple Time Series data 
Climate Modeling data
Census database, USA
DASL, The Data and Story Library (StatLib)
DELVE  Data for Evaluating Learning in Valid Experiments
Dr. B's Wide World of Web Data
International Association for Statistical Computing  datasets from IASC  few links to IASC databases
IEEE Neural Networks Council Standards Committee, Working Group on Data Modeling Benchmarks
National Space Science Data Center, NASA datasets)
Statistical Reference Datasets (NIST)
StatLog datasets (Portugal) Statlib, software and over 100 datasets
LLIAC datasets (Portugal)
SCDS  create your own syntethic data
SIMBAD astronomical database
Semisupervised learning benchmarks
Images:
Curvlets 
Waveatom transforms 
Rice wavelet toolbox 
Morphological Component Analysis 
SPARCO: sparse reconstruction algorithms toolbox 
Cytopathology
Texts:
The Oxford Text Archive
List of corpora (from UC SD)
Reuters21578 Text Categorization Collection  Reuters21578 Test Collection  Tools for Reuters21578 Dataset 
Ohsumed data collection
Cytopathology
NIPS 2000 competition data
Algoval  a system for evaluating algorithms on datasets.
The Robotics Data Set Repository
SMS Spam data